66 constexpr dna15() noexcept = default;
69 constexpr
dna15 & operator=(
dna15 const &) noexcept = default;
70 constexpr
dna15 & operator=(
dna15 &&) noexcept = default;
83 constexpr
dna15(t const & r) noexcept
92 rank_to_char_table[
alphabet_size]{
'A',
'B',
'C',
'D',
'G',
'H',
'K',
'M',
'N',
'R',
'S',
'T',
'V',
'W',
'Y'};
116 return rank_complement_table[rank];
122 return rank_to_char_table[rank];
129 return char_to_rank_table[
static_cast<index_t
>(chr)];
144 ret[rank_to_char_table[rnk]] = rnk;
145 ret[
to_lower(rank_to_char_table[rnk])] = rnk;
172inline namespace literals
189constexpr dna15 operator""_dna15(
char const c)
noexcept
208 for (
size_t i = 0; i < n; ++i)
209 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition alphabet_base.hpp:77
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition alphabet_base.hpp:69
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition alphabet_base.hpp:184
The 15 letter DNA alphabet, containing all IUPAC smybols minus the gap.
Definition dna15.hpp:48
constexpr dna15() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:40
The 15 letter RNA alphabet, containing all IUPAC smybols minus the gap.
Definition rna15.hpp:48
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.