36template <std::ranges::view urng_t>
58 using size_type = std::ranges::range_size_t<std::ranges::range_reference_t<urng_t>>;
60 using difference_type = std::ranges::range_difference_t<std::ranges::range_reference_t<urng_t>>;
68 template <
typename range_type,
template <
typename...>
typename derived_t_template,
typename... args_t>
72 static_assert(range_dimension_v<urng_t> == 2,
73 "This adaptor only handles range-of-range (two dimensions) as input.");
74 static_assert(std::ranges::viewable_range<urng_t>,
75 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
76 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
77 "The inner range of the range parameter to views::translate_join cannot be a temporary of "
79 static_assert(std::ranges::sized_range<urng_t>,
80 "The range parameter to views::translate_join must model std::ranges::sized_range.");
81 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
82 "The inner range of the range parameter to views::translate_join must model "
83 "std::ranges::sized_range.");
84 static_assert(std::ranges::random_access_range<urng_t>,
85 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
86 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
87 "The inner range of the range parameter to views::translate_join must model "
88 "std::ranges::random_access_range.");
90 "The range parameter to views::translate_join must be over a range over elements of "
91 "seqan3::nucleotide_alphabet.");
108 urange{std::move(_urange)},
129 template <
typename rng_t>
130 requires (!std::same_as<std::remove_cvref_t<rng_t>,
view_translate_join>) && std::ranges::viewable_range<rng_t>
180 return {*
this,
size()};
187 return {*
this,
size()};
253template <
typename urng_t>
255 -> view_translate_join<std::views::all_t<urng_t>>;
275 template <std::ranges::range urng_t>
278 static_assert(range_dimension_v<urng_t> == 2,
279 "This adaptor only handles range-of-range (two dimensions) as input.");
280 static_assert(std::ranges::viewable_range<urng_t>,
281 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
282 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
283 "The inner range of the range parameter to views::translate_join cannot be a "
284 "temporary of a non-view range.");
285 static_assert(std::ranges::sized_range<urng_t>,
286 "The range parameter to views::translate_join must model std::ranges::sized_range.");
287 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
288 "The inner range of the range parameter to views::translate_join must model "
289 "std::ranges::sized_range.");
290 static_assert(std::ranges::random_access_range<urng_t>,
291 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
292 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
293 "The inner range of the range parameter to views::translate_join must model "
294 "std::ranges::random_access_range.");
296 "The range parameter to views::translate_join must be over a range over elements of "
297 "seqan3::nucleotide_alphabet.");
303 template <std::ranges::range urng_t>
306 return me(std::forward<urng_t>(urange));
Template for range adaptor closure objects that store arguments and wrap a proto-adaptor.
Definition adaptor_from_functor.hpp:54
A CRTP base template for creating random access iterators.
Definition random_access_iterator.hpp:39
A generic random access iterator that delegates most operations to the range.
Definition random_access_iterator.hpp:288
The return type of seqan3::views::translate_join.
Definition translate_join.hpp:38
const_iterator begin() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition translate_join.hpp:159
std::ranges::range_size_t< std::ranges::range_reference_t< urng_t > > size_type
The size_type.
Definition translate_join.hpp:58
view_translate_join() noexcept=default
Defaulted.
small_vector< translation_frames, 6 > selected_frames
The selected frames corresponding to the frames required.
Definition translate_join.hpp:45
view_translate_join(rng_t &&_urange, translation_frames const _tf=translation_frames::six_frames)
Construct from another range.
Definition translate_join.hpp:132
view_translate_single< std::views::all_t< std::ranges::range_reference_t< urng_t > > > reference
The reference_type.
Definition translate_join.hpp:52
std::ranges::range_difference_t< std::ranges::range_reference_t< urng_t > > difference_type
A signed integer type, usually std::ptrdiff_t.
Definition translate_join.hpp:60
iterator begin() noexcept
Returns an iterator to the first element of the container.
Definition translate_join.hpp:153
const_iterator end() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition translate_join.hpp:184
size_type size() noexcept
Returns the number of elements in the view.
Definition translate_join.hpp:202
urng_t urange
The data members of view_translate_join.
Definition translate_join.hpp:41
reference operator[](size_type const n)
Return the n-th element.
Definition translate_join.hpp:232
const_reference operator[](size_type const n) const
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition translate_join.hpp:241
size_type size() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition translate_join.hpp:208
translation_frames tf
The frames that should be used for translation.
Definition translate_join.hpp:43
iterator end() noexcept
Returns an iterator to the element following the last element of the container.
Definition translate_join.hpp:178
The return type of seqan3::views::translate_single.
Definition translate.hpp:152
A constexpr vector implementation with dynamic size at compile time.
Definition small_vector.hpp:44
constexpr void push_back(value_type const value) noexcept
Appends the given element value to the end of the container.
Definition small_vector.hpp:847
constexpr size_type size() const noexcept
Returns the number of elements in the container, i.e. std::distance(begin(), end()).
Definition small_vector.hpp:571
Provides various transformation traits used by the range module.
constexpr auto translate_join
A view that translates nucleotide into aminoacid alphabet with 1, 2, 3 or 6 frames....
Definition translate_join.hpp:378
constexpr auto translate_single
A view that translates nucleotide into aminoacid alphabet for one of the six frames.
Definition translate.hpp:520
Specifies requirements of an input range type for which the const version of that type satisfies the ...
A concept that indicates whether an alphabet represents nucleotides.
The internal SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
The SeqAn namespace for views.
Definition char_strictly_to.hpp:19
translation_frames
Specialisation values for single and multiple translation frames.
Definition translate.hpp:59
@ forward_frame2
The third forward frame starting at position 2.
@ forward_frame0
The first forward frame starting at position 0.
@ reverse_frame0
The first reverse frame starting at position 0.
@ reverse_frame2
The third reverse frame starting at position 2.
@ forward_frame1
The second forward frame starting at position 1.
@ reverse_frame1
The second reverse frame starting at position 1.
A constexpr string implementation to manipulate string literals at compile time.
Definition of the range adaptor object type for seqan3::views::translate_join.
Definition translate_join.hpp:263
constexpr auto operator()(urng_t &&urange, translation_frames const tf=translation_frames::six_frames) const
Directly return an instance of the view, initialised with the given parameters.
Definition translate_join.hpp:276
constexpr auto operator()(translation_frames const tf=translation_frames::six_frames) const
Store the argument and return a range adaptor closure object.
Definition translate_join.hpp:265
constexpr friend auto operator|(urng_t &&urange, translate_join_fn const &me)
This adaptor is usable without setting the frames parameter in which case the default is chosen.
Definition translate_join.hpp:304
Provides seqan3::views::translate and seqan3::views::translate_single.